Package: FIMS 0.2.0.0
Christine Stawitz
FIMS: The Fisheries Integrated Modeling System
The Fisheries Integrated Modeling System is a next-generation framework of stock assessment models, assisting fishery managers with the goal of achieving sustainable fisheries. This system, when completed in a few years, offers the NOAA Fisheries and global fisheries science communities an advanced set of stock assessment models. These tools can be used separately or in combination to incorporate ecosystem and socioeconomic data and models, as well as climate effects and other drivers within the marine environment, into stock assessment models.
Authors:
FIMS_0.2.0.0.tar.gz
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FIMS.pdf |FIMS.html✨
FIMS/json (API)
NEWS
| # Install 'FIMS' in R: |
| install.packages('FIMS', repos = c('https://noaa-fims.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/noaa-fims/fims/issues
- data_mile1 - FIMS input data frame for milestone 1
Last updated 1 months agofrom:f0d4e766dd. Checks:OK: 1 WARNING: 8. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 25 2024 |
| R-4.5-win-x86_64 | WARNING | Aug 25 2024 |
| R-4.5-linux-x86_64 | WARNING | Aug 25 2024 |
| R-4.4-win-x86_64 | WARNING | Aug 25 2024 |
| R-4.4-mac-x86_64 | WARNING | Aug 25 2024 |
| R-4.4-mac-aarch64 | WARNING | Aug 25 2024 |
| R-4.3-win-x86_64 | WARNING | Aug 25 2024 |
| R-4.3-mac-x86_64 | WARNING | Aug 25 2024 |
| R-4.3-mac-aarch64 | WARNING | Aug 25 2024 |
Exports:AgeCompBevertonHoltRecruitmentclearclear_logsCreateTMBModelDoubleLogisticSelectivityEWAAgrowthFIMSFrameFleetget_fixedget_randomIndexLogisticMaturityLogisticSelectivitym_agecompm_indexm_landingsParameterPopulationrun_gtestsetup_and_run_gtestsetup_gtestTMBDlnormDistributionTMBDmultinomDistributionTMBDnormDistribution
Dependencies:clicolorspacedplyrfansifarvergenericsggplot2gluegtableisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcppRcppEigenrlangscalestibbletidyselectTMButf8vctrsviridisLitewithr
FIMS Path: Maturity
Rendered fromfims-path-maturity.Rmdusingknitr::rmarkdownon Aug 25 2024.Last update: 2023-11-28
Started: 2023-07-11
Fisheries Integrated Modeling System (FIMS) Documentation
Rendered fromfims-documentation.Rmdusingknitr::rmarkdownon Aug 25 2024.Last update: 2024-06-18
Started: 2024-06-17
Introducing the Fisheries Integrated Modeling System (FIMS)
Rendered fromfims-demo.Rmdusingknitr::rmarkdownon Aug 25 2024.Last update: 2024-06-12
Started: 2023-07-11
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| FIMS input data frame for milestone 1 | data_mile1 |
| Class constructors for 'FIMSFrame' and associated child classes | FIMSFrame |
| Get the age-composition data to be used in the model | m_agecomp |
| Get the age-composition data data to be used in the model | m_agecomp,FIMSFrame-method |
| Get the index data to be used in the model | m_index |
| Get the index data to be used in the model | m_index,FIMSFrame-method |
| Get the landings data to be used in the model | m_landings |
| Get the landings data to be used in the model | m_landings,FIMSFrame-method |
| Run the google test suite | run_gtest |
| Setup and run the google test suite | setup_and_run_gtest |
| Set up your local environment to run the google tests locally | setup_gtest |
