r4ss - R Code for Stock Synthesis

A collection of R functions for use with Stock Synthesis, a fisheries stock assessment modeling platform written in ADMB by Dr. Richard D. Methot at the NOAA Northwest Fisheries Science Center. The functions include tools for summarizing and plotting results, manipulating files, visualizing model parameterizations, and various other common stock assessment tasks. This version of '{r4ss}' is compatible with Stock Synthesis versions 3.24 through 3.30 (specifically version 3.30.22, from October 2023). Support for 3.24 models is only through the core functions for reading output and plotting.

Last updated 3 days ago

fisheriesfisheries-stock-assessmentstock-synthesis

11.32 score 38 stars 2 packages 1.0k scripts 532 downloads

FIMS - The Fisheries Integrated Modeling System

The Fisheries Integrated Modeling System is a next-generation framework of stock assessment models, assisting fishery managers with the goal of achieving sustainable fisheries. This system, when completed in a few years, offers the NOAA Fisheries and global fisheries science communities an advanced set of stock assessment models. These tools can be used separately or in combination to incorporate ecosystem and socioeconomic data and models, as well as climate effects and other drivers within the marine environment, into stock assessment models.

Last updated 4 months ago

7.11 score 16 stars 20 scripts

TMBhelper - Package for basic helper functions that are not worth putting in a specialized contributed package

Basic functions as suggested and contributed by users and not worth making a specific contributed R package

Last updated 3 years ago

4.33 score 9 stars 59 scripts